Merge branch 'devel' into issue104
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jevans
commit
1b09fd8eaa
2 changed files with 29 additions and 82 deletions
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@ -1193,8 +1193,8 @@ class PaletteBox(Jp2kBox):
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offset of the box from the start of the file.
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longname : str
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more verbose description of the box.
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palette : list
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Colormap represented as list of 1D arrays, one per color component.
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palette : ndarray
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Colormap array.
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"""
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def __init__(self, palette, bits_per_component, signed, length=0,
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offset=-1):
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@ -1207,8 +1207,7 @@ class PaletteBox(Jp2kBox):
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def __str__(self):
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msg = Jp2kBox.__str__(self)
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msg += '\n Size: ({0} x {1})'.format(len(self.palette[0]),
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len(self.palette))
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msg += '\n Size: ({0} x {1})'.format(*self.palette.shape)
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return msg
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@staticmethod
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@ -1238,68 +1237,29 @@ class PaletteBox(Jp2kBox):
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bps = [((x & 0x07f) + 1) for x in data]
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signed = [((x & 0x80) > 1) for x in data]
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fmt = '>'
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for bits in bps:
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if bits <= 8:
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fmt += 'B'
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elif bits <= 16:
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fmt += 'H'
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elif bits <= 32:
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fmt += 'I'
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# Each palette component is padded out to the next largest byte.
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# That means a list comprehension does this in one shot.
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row_nbytes = sum([int(math.ceil(x/8.0)) for x in bps])
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# Form the format string so that we can intelligently unpack the
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# colormap. We have to do this because it is possible that the
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# colormap columns could have different datatypes.
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#
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# This means that we store the palette as a list of 1D arrays,
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# which reverses the usual indexing scheme.
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read_buffer = fptr.read(num_entries * row_nbytes)
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palette = _buffer2palette(read_buffer, num_entries, num_columns, bps)
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palette = np.zeros((num_entries, num_columns), dtype=np.int32)
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for j in range(num_entries):
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palette[j] = struct.unpack_from(fmt, read_buffer,
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offset=j * row_nbytes)
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box = PaletteBox(palette, bps, signed, length=length, offset=offset)
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return box
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def _buffer2palette(read_buffer, num_rows, num_cols, bps):
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"""Construct the palette from the buffer read from file.
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Parameters
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----------
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read_buffer : iterable
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Byte array of palette information read from file.
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num_rows, num_cols : int
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Size of palette.
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bps : iterable
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Bits per sample for each channel.
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Returns
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-------
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palette : list of 1D arrays
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Each 1D array corresponds to a channel.
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"""
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row_nbytes = 0
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palette = []
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fmt = '>'
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for j in range(num_cols):
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if bps[j] <= 8:
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row_nbytes += 1
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fmt += 'B'
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palette.append(np.zeros(num_rows, dtype=np.uint8))
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elif bps[j] <= 16:
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row_nbytes += 2
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fmt += 'H'
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palette.append(np.zeros(num_rows, dtype=np.uint16))
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elif bps[j] <= 32:
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row_nbytes += 4
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fmt += 'I'
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palette.append(np.zeros(num_rows, dtype=np.uint32))
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else:
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msg = 'Unsupported palette bitdepth (%d).'.format(bps[j])
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raise IOError(msg)
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for j in range(num_rows):
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row_buffer = read_buffer[(row_nbytes * j):(row_nbytes * (j + 1))]
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row = struct.unpack(fmt, row_buffer)
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for k in range(num_cols):
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palette[k][j] = row[k]
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return palette
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# Map rreq codes to display text.
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_READER_REQUIREMENTS_DISPLAY = {
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0: 'File not completely understood',
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@ -3797,19 +3797,16 @@ class TestSuiteDump(unittest.TestCase):
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self.assertEqual(jp2.box[2].box[0].ip_provided, False)
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# Palette box.
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self.assertEqual(len(jp2.box[2].box[1].palette), 3)
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self.assertEqual(len(jp2.box[2].box[1].palette[0]), 256)
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self.assertEqual(len(jp2.box[2].box[1].palette[1]), 256)
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self.assertEqual(len(jp2.box[2].box[1].palette[2]), 256)
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np.testing.assert_array_equal(jp2.box[2].box[1].palette[0][0], 0)
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np.testing.assert_array_equal(jp2.box[2].box[1].palette[1][0], 0)
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np.testing.assert_array_equal(jp2.box[2].box[1].palette[2][0], 0)
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np.testing.assert_array_equal(jp2.box[2].box[1].palette[0][128], 73)
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np.testing.assert_array_equal(jp2.box[2].box[1].palette[1][128], 92)
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np.testing.assert_array_equal(jp2.box[2].box[1].palette[2][128], 53)
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np.testing.assert_array_equal(jp2.box[2].box[1].palette[0][-1], 245)
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np.testing.assert_array_equal(jp2.box[2].box[1].palette[1][-1], 245)
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np.testing.assert_array_equal(jp2.box[2].box[1].palette[2][-1], 245)
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self.assertEqual(jp2.box[2].box[1].palette.shape, (256, 3))
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np.testing.assert_array_equal(jp2.box[2].box[1].palette[0, 0], 0)
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np.testing.assert_array_equal(jp2.box[2].box[1].palette[0, 1], 0)
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np.testing.assert_array_equal(jp2.box[2].box[1].palette[0, 2], 0)
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np.testing.assert_array_equal(jp2.box[2].box[1].palette[128, 0], 73)
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np.testing.assert_array_equal(jp2.box[2].box[1].palette[128, 1], 92)
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np.testing.assert_array_equal(jp2.box[2].box[1].palette[128, 2], 53)
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np.testing.assert_array_equal(jp2.box[2].box[1].palette[255, 0], 245)
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np.testing.assert_array_equal(jp2.box[2].box[1].palette[255, 1], 245)
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np.testing.assert_array_equal(jp2.box[2].box[1].palette[255, 2], 245)
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# Component mapping box
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self.assertEqual(jp2.box[2].box[2].component_index, (0, 0, 0))
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@ -5699,10 +5696,7 @@ class TestSuiteDump(unittest.TestCase):
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# Jp2 Header
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# Palette box.
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self.assertEqual(len(jp2.box[3].box[2].palette), 3)
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self.assertEqual(len(jp2.box[3].box[2].palette[0]), 256)
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self.assertEqual(len(jp2.box[3].box[2].palette[1]), 256)
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self.assertEqual(len(jp2.box[3].box[2].palette[2]), 256)
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self.assertEqual(jp2.box[3].box[2].palette.shape, (256, 3))
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# Jp2 Header
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# Component mapping box
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@ -6127,11 +6121,7 @@ class TestSuiteDump(unittest.TestCase):
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# Jp2 Header
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# Palette box.
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self.assertEqual(len(jp2.box[3].box[2].palette), 4)
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self.assertEqual(len(jp2.box[3].box[2].palette[0]), 1)
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self.assertEqual(len(jp2.box[3].box[2].palette[1]), 1)
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self.assertEqual(len(jp2.box[3].box[2].palette[2]), 1)
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self.assertEqual(len(jp2.box[3].box[2].palette[3]), 1)
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self.assertEqual(jp2.box[3].box[2].palette.shape, (1, 4))
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# Jp2 Header
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# Component mapping box
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@ -6242,10 +6232,7 @@ class TestSuiteDump(unittest.TestCase):
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# Jp2 Header
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# Palette box.
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# 3 columns with 16 entries.
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self.assertEqual(len(jp2.box[3].box[2].palette), 3)
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self.assertEqual(len(jp2.box[3].box[2].palette[0]), 16)
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self.assertEqual(len(jp2.box[3].box[2].palette[1]), 16)
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self.assertEqual(len(jp2.box[3].box[2].palette[2]), 16)
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self.assertEqual(jp2.box[3].box[2].palette.shape, (16, 3))
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# Jp2 Header
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# Component mapping box
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